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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97629451_97630260_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97629451 - 97630260
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
CTTTAAAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
ELISELRAARKEENKLQEEI
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
78
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
67.2
0.39
1
63.9
40.6
Minor 5ss
37.5
-1.4
3.1
42.1
44.8
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039731
97617827 - 97658032
40206
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206