About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97631240_97632090_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97631240 - 97632090
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACCAC
5'SS Class:
major
3'SS Sequence:
TGTGTCATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
CTAACATTAACT
Flanking Amino Acid:
QEVIIQGYQQENEKLYKQMK
Intron Amino Acid Position:
710

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
58.3
40.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
69.7
0.44
0.9
67.1
39.1
Minor 5ss
43.6
-0.7
3
58.6
46.2
Minor BPS
65.2
0.55
1.7
79.23
42.2

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206
ENSAPLT00000039731
97617827 - 97658032
40206