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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97632229_97632919_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97632229 - 97632919
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTAT
5'SS Class:
major
3'SS Sequence:
TTCTGTCTGAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TATGCATCAAAT
Flanking Amino Acid:
GQENYVLQSKLRSMEELSKE
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
34.2
Major BPS
71.6
0.54
1
72
33.1
Major PPT
64.4
0.32
1.2
66.8
38.6
Minor 5ss
40.9
-1
3.1
58.4
46.1
Minor BPS
49.2
0.02
2
72.5
43.5

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039731
97617827 - 97658032
40206
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206