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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97636016_97637146_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97636016 - 97637146
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAAAT
Flanking Amino Acid:
LLSRGNRTNQAIQSHSTKNE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.7
0.51
0.9
68
37.7
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
50.7
0.1
2.1
81.25
39.2

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043852
97617827 - 97658032
40206
ENSAPLT00000039731
97617827 - 97658032
40206
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206