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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97637412_97638272_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
97637412 - 97638272
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTGACTTTATTT
Flanking Amino Acid:
NARGFDLEPESPVKQTGSTG
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
79.8
33.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
46.5
-0.4
2.5
63.1
41.4
Minor BPS
54.9
0.23
1.6
69.05
42.4

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206
ENSAPLT00000039731
97617827 - 97658032
40206