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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97639867_97640888_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97639867 - 97640888
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTCTTCACA
Flanking Amino Acid:
NPGFKTEGNQEPNTGMLAKV
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.6
0.78
0.8
80
32.1
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
68.4
0.57
1.7
78.47
38.6

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039731
97617827 - 97658032
40206
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206