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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97640957_97642006_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97640957 - 97642006
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATACTA
5'SS Class:
major
3'SS Sequence:
TTTTACTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTATTTTACTC
Flanking Amino Acid:
EEEAAHEEKSGSYSEDFEEE
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
66.3
39
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
88
0.86
0.7
85.7
28.5
Minor 5ss
35.8
-1.6
3.2
45.3
43.6
Minor BPS
58.2
0.24
1.6
69.89
36.2

Associated Gene:

Gene:
CEP162
Ensembl Gene ID:
ENSAPLG00000011565
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022847
97617827 - 97646229
28403
ENSAPLT00000012114
97617827 - 97658032
40206
ENSAPLT00000043852
97617827 - 97658032
40206
ENSAPLT00000039731
97617827 - 97658032
40206