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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97749282_97752292_F

Intron Information:

Intron Rank:
137976
Intron Class:
major
Intron Phase:
Intron Coordinates:
97749282 - 97752292
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82
0.72
0.9
86.9
24.3
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
52.3
0.15
1.8
69.24
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047681
97748437 - 97753286
4850