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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97752419_97753105_F

Intron Information:

Intron Rank:
137977
Intron Class:
major
Intron Phase:
Intron Coordinates:
97752419 - 97753105
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
AAAACCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
65.3
40.6
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
33
-1.9
3.1
39.7
39.9
Minor BPS
60.2
0.4
1.7
74.95
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024268
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047681
97748437 - 97753286
4850