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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9780514_9799293_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9780514 - 9799293
Intron Length:
18780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCGCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
CCAACCTAACCT
Flanking Amino Acid:
ITRSANLTDQPSWNRDHDDT
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
72.4
0.5
0.8
65.6
30.3
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
46.7
-0.1
2
60.9
48.4

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035691
9702110 - 9900105
197996
ENSAPLT00000025473
9707147 - 9802719
95573
ENSAPLT00000018791
9702110 - 9806518
104409
ENSAPLT00000046105
9705862 - 9802719
96858
ENSAPLT00000009586
9702317 - 9805674
103358
ENSAPLT00000043259
9702317 - 9806518
104202