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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97817775_97820147_F

Intron Information:

Intron Rank:
151285
Intron Class:
major
Intron Phase:
Intron Coordinates:
97817775 - 97820147
Intron Length:
2373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
78.7
0.65
0.8
70.5
39.9
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
62.7
0.48
1.5
80.28
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031226
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028410
97817637 - 97821093
3457