About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97835915_97836900_R


Intron Information:

Intron Rank:
152087

Intron Class:
minor-like

Intron Phase:

Intron Coordinates:
97835915 - 97836900

Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTATCCTTA

5'SS Class:
weak_minor

3'SS Sequence:
ACTTGGGTTAAAG|G

3'SS Class:
minor_BPS

U2 Branch Point Sequence:
TATTTAT

U12 Branch Point Sequence:
GTATTTATAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
60.1
0.24
1.2
58.5
43.1

Major BPS
88.7
0.96
0.8
78
36.5

Major PPT
57.9
0.18
1.2
55.3
43.4

Minor 5ss
80.1
1.01
1.5
73
44

Minor BPS
62.5
0.47
1.6
78.23
37.7

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

97835540 - 97836957
1418