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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97872549_97875030_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
97872549 - 97875030
Intron Length:
2482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTC
5'SS Class:
major
3'SS Sequence:
TATTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTCTTACAC
Flanking Amino Acid:
FEDIPGIPKQGNAGSSTLLQ
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
73.3
36.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86
0.81
0.8
77.7
36.3
Minor 5ss
40.5
-1.1
3.5
59
45.7
Minor BPS
61
0.33
1.7
71.98
38.9

Associated Gene:

Gene:
TBX18
Ensembl Gene ID:
ENSAPLG00000011274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011741
97871824 - 97892852
21029