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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_97879103_97880351_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
97879103 - 97880351
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCGG
5'SS Class:
major
3'SS Sequence:
ATCATCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTTCTTTAATC
Flanking Amino Acid:
TTVTAYQNQQITRLKIDRNP
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.2
63.6
48.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75
0.56
0.9
68.5
36.6
Minor 5ss
39.2
-1.2
2.9
50.5
45.8
Minor BPS
83
1.02
0.9
84.51
27.3

Associated Gene:

Gene:
TBX18
Ensembl Gene ID:
ENSAPLG00000011274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011741
97871824 - 97892852
21029