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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9799441_9800842_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9799441 - 9800842
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TCCTCCTTCACC
Flanking Amino Acid:
LRFHLLELEKVHELCDNFCH
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
65.7
0.35
1
60
40.4
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
68.3
0.56
1.8
73.91
43.5

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018791
9702110 - 9806518
104409
ENSAPLT00000046105
9705862 - 9802719
96858
ENSAPLT00000009586
9702317 - 9805674
103358
ENSAPLT00000043259
9702317 - 9806518
104202
ENSAPLT00000035691
9702110 - 9900105
197996
ENSAPLT00000025473
9707147 - 9802719
95573