Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98016349_98028780_R

Intron Information:

Intron Rank:

128829

Intron Class:

major

Intron Phase:

Intron Coordinates:

98016349 - 98028780

Intron Length:

12432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

ATTTTCTCAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.8

35.2

Major BPS

75.9

0.64

66.1

40.5

Major PPT

78.9

0.65

0.9

74.7

34.3

Minor 5ss

28.4

-2.5

2.8

34.6

41.3

Minor BPS

73.7

0.74

1.4

81.94

32.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034221

98016136 - 98153820

137685

ENSAPLT00000028171

98016216 - 98072242

56027