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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9801783_9802332_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9801783 - 9802332
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAAA
5'SS Class:
major
3'SS Sequence:
TTCTTATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATAT
Flanking Amino Acid:
NEDIAVFAKQIRAEKPLFSS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.3
74.1
38.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
0.8
78.5
34
Minor 5ss
34.1
-1.8
2.7
40
45.6
Minor BPS
57.2
0.3
1.8
72.21
44.9

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018791
9702110 - 9806518
104409
ENSAPLT00000046105
9705862 - 9802719
96858
ENSAPLT00000009586
9702317 - 9805674
103358
ENSAPLT00000043259
9702317 - 9806518
104202
ENSAPLT00000035691
9702110 - 9900105
197996
ENSAPLT00000025473
9707147 - 9802719
95573