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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98020033_98028780_R

Intron Information:

Intron Rank:
128827
Intron Class:
major
Intron Phase:
Intron Coordinates:
98020033 - 98028780
Intron Length:
8748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTACTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTGTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
75
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.7
0.65
0.9
73.5
36.9
Minor 5ss
28.4
-2.5
2.8
34.6
41.3
Minor BPS
51.7
0.13
2.3
77.24
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016452
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023619
98019727 - 98095069
75343