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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9802475_9804066_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9802475 - 9804066
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
GTGTGTGTGACT
Flanking Amino Acid:
ALKRDKDAIYGHPLFPLLAL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
68.7
37.6
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
32.1
-2
3.3
35.7
41.2
Minor BPS
45.5
-0.2
2.4
66.97
44.5

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035691
9702110 - 9900105
197996
ENSAPLT00000018791
9702110 - 9806518
104409
ENSAPLT00000009586
9702317 - 9805674
103358
ENSAPLT00000043259
9702317 - 9806518
104202