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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98028969_98071875_R

Intron Information:

Intron Rank:
128830
Intron Class:
major
Intron Phase:
Intron Coordinates:
98028969 - 98071875
Intron Length:
42907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCTCTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.3
0.64
0.7
77.5
24.5
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
70.8
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016452
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028171
98016216 - 98072242
56027