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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9804294_9805640_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9804294 - 9805640
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACCG
Flanking Amino Acid:
MTCRHYDELPHYGGM
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
66.3
0.37
0.9
58.7
38.3
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
42
-0.7
2.1
43.2
48.2

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009586
9702317 - 9805674
103358