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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9804294_9899930_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9804294 - 9899930
Intron Length:
95637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCGTGCTGACCG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
75.8
34.3
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
66.3
0.37
0.9
58.7
38.3
Minor 5ss
32.5
-2
3.1
35.2
41.4
Minor BPS
42
-0.7
2.1
43.2
48.2

Associated Gene:

Gene:
MEIS1
Ensembl Gene ID:
ENSAPLG00000009141
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035691
9702110 - 9900105
197996