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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98070934_98072357_F

Intron Information:

Intron Rank:
124304
Intron Class:
major
Intron Phase:
Intron Coordinates:
98070934 - 98072357
Intron Length:
1424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
TTGTGACCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTTTGTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
67.2
0.39
1
64.6
41.6
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
58.7
0.25
2
76.51
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020270
98068155 - 98075661
7507