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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98072486_98075469_F

Intron Information:

Intron Rank:
124305
Intron Class:
major
Intron Phase:
Intron Coordinates:
98072486 - 98075469
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.3
0.75
0.8
80.5
36.7
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017014
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020270
98068155 - 98075661
7507