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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98154248_98158122_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98154248 - 98158122
Intron Length:
3875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAGAT
U12 Branch Point Sequence:
GGGTCTTAGATT
Flanking Amino Acid:
FMNLLRYDAMALGNHEFDEG
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
59.4
44.9
Major BPS
66.8
0.42
1.1
64.4
41.8
Major PPT
80.7
0.69
0.8
75.8
32.8
Minor 5ss
31.2
-2.2
3.2
36.5
42.7
Minor BPS
49.6
0.05
1.7
63.67
41.4

Associated Gene:

Gene:
NT5E
Ensembl Gene ID:
ENSAPLG00000011054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011513
98153915 - 98176527
22613