About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98163543_98166655_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98163543 - 98166655
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTAC
5'SS Class:
major
3'SS Sequence:
CTGTCTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCCTCTTTACAT
Flanking Amino Acid:
GGHTNTFLYTGTPPSTEQPD
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
32.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.3
0.57
0.9
69.9
35.6
Minor 5ss
46.6
-0.3
2.5
61.2
43.7
Minor BPS
50.5
0.09
1.8
63.96
46.8

Associated Gene:

Gene:
NT5E
Ensembl Gene ID:
ENSAPLG00000011054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011513
98153915 - 98176527
22613