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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98166854_98168396_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98166854 - 98168396
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTTTTACACT
Flanking Amino Acid:
PILLDSSVPEDEHIKEEVEK
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.7
79.1
26.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
49.7
0.06
2.1
74.34
43.4

Associated Gene:

Gene:
NT5E
Ensembl Gene ID:
ENSAPLG00000011054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011513
98153915 - 98176527
22613