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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98172266_98173794_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98172266 - 98173794
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
AGTACTCAAACA
Flanking Amino Acid:
KGTGELLQVGGIHVVYDLSR
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
85.2
0.79
0.7
81.3
29.9
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
46.7
-0.2
2
60.08
39.5

Associated Gene:

Gene:
NT5E
Ensembl Gene ID:
ENSAPLG00000011054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011513
98153915 - 98176527
22613