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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98173996_98175697_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98173996 - 98175697
Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTTTGCTTATCT
Flanking Amino Acid:
LKEKHLAYEKGEPDVEVVSR
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
70.3
0.46
0.9
69.4
36.7
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
69.8
0.7
2
91.83
37.8

Associated Gene:

Gene:
NT5E
Ensembl Gene ID:
ENSAPLG00000011054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011513
98153915 - 98176527
22613