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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98189651_98189835_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98189651 - 98189835
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CATATCTTATTT
Flanking Amino Acid:
KSVPGKLMKEKGQHLEPFIM
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
83.5
35.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
84.3
0.77
0.8
81.9
34
Minor 5ss
46.2
-0.4
2.8
67.2
43.9
Minor BPS
55
0.24
1.6
69.15
42.2

Associated Gene:

Gene:
SNX14
Ensembl Gene ID:
ENSAPLG00000010097
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032445
98183234 - 98233089
49856
ENSAPLT00000010653
98183234 - 98233089
49856