About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98191834_98192197_R


Intron Information:

Intron Rank:
20

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
98191834 - 98192197

Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTATCAAAC

5'SS Class:
major

3'SS Sequence:
TTCATTTTCAAAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTTAT

U12 Branch Point Sequence:
CTTTCCTTCATT

Flanking Amino Acid:
KREEFQEYLQKLLQHPELSN

Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.7
0.49
1.2
67.7
37.5

Major BPS
83.6
0.84
0.8
71.9
35.8

Major PPT
72.3
0.5
1
73.9
34.5

Minor 5ss
45.4
-0.5
2.7
60.5
44.2

Minor BPS
73
0.8
1.7
87.41
38.9

Associated Gene:

Gene:
SNX14

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

98183234 - 98233089
49856

98183234 - 98233089
49856