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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98198650_98205412_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98198650 - 98205412
Intron Length:
6763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTAATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
GCTTCTGTAATC
Flanking Amino Acid:
ESPTRNSKFNRTTQKRGESF
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
67.9
0.4
0.9
59.4
40.7
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
55.5
0.15
2
66.24
40.3

Associated Gene:

Gene:
SNX14
Ensembl Gene ID:
ENSAPLG00000010097
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032445
98183234 - 98233089
49856