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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98202265_98205412_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98202265 - 98205412
Intron Length:
3148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAT
U12 Branch Point Sequence:
TCGGGGGTAATT
Flanking Amino Acid:
ESPTRNSKFNRSSLSLDDFR
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
51.5
0.04
1.5
55.4
48.1
Major PPT
78.1
0.63
0.9
72
38
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
36.5
-0.9
2.7
54.19
48.3

Associated Gene:

Gene:
SNX14
Ensembl Gene ID:
ENSAPLG00000010097
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010653
98183234 - 98233089
49856