About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98211331_98211472_R


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
98211331 - 98211472

Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCT|GTAAGCAAA

5'SS Class:
major

3'SS Sequence:
ATCTCCTATTAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
GTGTTTTTAATC

Flanking Amino Acid:
FAEPRNKKPSVLKLELKEIR

Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.9
0.47
1.1
67.5
39.4

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
65.2
0.34
1.1
68.8
35.9

Minor 5ss
41.6
-0.9
2.9
58.5
45.8

Minor BPS
69.1
0.58
1.2
70.01
36

Associated Gene:

Gene:
SNX14

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

98183234 - 98233089
49856

98183234 - 98233089
49856