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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98252597_98255687_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98252597 - 98255687
Intron Length:
3091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTGCTTTAAAT
Flanking Amino Acid:
KAQRQAAKNQMYDDYYYYGP
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79
0.65
0.7
72.8
32.1
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
74.7
0.85
1.4
88.96
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032363
98250060 - 98271553
21494
ENSAPLT00000010353
98250110 - 98353553
103444