Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98270497_98271393_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

98270497 - 98271393

Intron Length:

897

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TAATTAGTAATT

Flanking Amino Acid:

AEKLDEIYVAGLVAHSDLDE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.5

36.8

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

0.83

0.6

81.2

30.9

Minor 5ss

38.5

-1.3

3.4

55.9

48.3

Minor BPS

48.4

-0

2.2

70.77

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009918

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032363

98250060 - 98271553

21494

ENSAPLT00000010353

98250110 - 98353553

103444