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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98271554_98353517_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98271554 - 98353517
Intron Length:
81964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TGCGTTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TGTGGCTTAATT
Flanking Amino Acid:
LTALGEAPWMISGNMATEHV
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
63.7
0.31
1.1
60.1
45
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
63.6
0.51
1.9
80.32
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010353
98250110 - 98353553
103444