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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98448673_98448786_F

Intron Information:

Intron Rank:
135603
Intron Class:
major
Intron Phase:
Intron Coordinates:
98448673 - 98448786
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCAGG
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAG
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
56.3
48.1
Major BPS
46.7
-0.2
1.7
60.8
45.4
Major PPT
85.1
0.79
0.7
81.1
30.9
Minor 5ss
37.5
-1.4
3.1
45
45
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022958
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032811
98448231 - 98449256
1026