About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98503579_98506840_F

Intron Information:

Intron Rank:
128352
Intron Class:
major
Intron Phase:
Intron Coordinates:
98503579 - 98506840
Intron Length:
3262

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCCCCCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
87.9
27.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.3
0.75
0.8
81.4
30.6
Minor 5ss
26.5
-2.7
3.8
42.1
44.5
Minor BPS
50
0.08
2.2
78.94
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019132
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025480
98503174 - 98507911
4738