Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98530346_98559588_R

Intron Information:

Intron Rank:

141930

Intron Class:

major

Intron Phase:

Intron Coordinates:

98530346 - 98559588

Intron Length:

29243

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

TGCCAACTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

TGCTGATGAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

77.9

38.6

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

69.5

0.44

58.5

41.9

Minor 5ss

38.7

-1.3

2.8

47.8

47.9

Minor BPS

48.5

-0

2.1

70.98

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023684

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028223

98530055 - 98559698

29644