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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98692601_98694649_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98692601 - 98694649
Intron Length:
2049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTATCCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTTGTAAAAT
Flanking Amino Acid:
KWEEFQAFVQVAHKNLMENG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.1
0.57
0.9
71
40
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
48.3
-0
2.4
74.89
42

Associated Gene:

Gene:
ZNF292
Ensembl Gene ID:
ENSAPLG00000030037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026353
98662388 - 98695333
32946
ENSAPLT00000023439
98662388 - 98718412
56025
ENSAPLT00000034314
98662388 - 98718412
56025