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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98694786_98695277_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98694786 - 98695277
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTTTCCCAATG
Flanking Amino Acid:
LSQEQLDPDKGARDLQFRVG
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
49.9
-0.1
1.9
62.51
39.6

Associated Gene:

Gene:
ZNF292
Ensembl Gene ID:
ENSAPLG00000030037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026353
98662388 - 98695333
32946