About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98704674_98707545_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98704674 - 98707545
Intron Length:
2872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAG
U12 Branch Point Sequence:
ACTTGCTTAGTC
Flanking Amino Acid:
GSPNEKLMEEIAEVDCKDAL
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
52.3
0.06
1.6
51.4
46
Major PPT
84.5
0.78
0.7
77
31.7
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
52.2
0.05
2
64.28
42

Associated Gene:

Gene:
ZNF292
Ensembl Gene ID:
ENSAPLG00000030037
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034314
98662388 - 98718412
56025
ENSAPLT00000023439
98662388 - 98718412
56025