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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98725431_98725520_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
98725431 - 98725520
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGAACA
5'SS Class:
major
3'SS Sequence:
TCTCTCACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTGCTTTGACC
Flanking Amino Acid:
VYVAAAENIWKLWALQLILV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.3
36.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
73
0.52
0.9
71.7
32.7
Minor 5ss
34.4
-1.8
3.1
41.5
38.8
Minor BPS
74.4
0.75
1.3
81.35
33.5

Associated Gene:

Gene:
GJB7
Ensembl Gene ID:
ENSAPLG00000001764
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036492
98724692 - 98728425
3734
ENSAPLT00000028516
98724692 - 98729559
4868
ENSAPLT00000001758
98724860 - 98751259
26400
ENSAPLT00000046272
98724860 - 98751259
26400