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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98725682_98727173_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
98725682 - 98727173
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTCTTTTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GCTTCTTTTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
81.7
31.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.6
0.85
0.8
84
30
Minor 5ss
38.8
-1.3
3
57.3
41.2
Minor BPS
60.9
0.34
1.6
67.32
39.4

Associated Gene:

Gene:
GJB7
Ensembl Gene ID:
ENSAPLG00000001764
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046272
98724860 - 98751259
26400
ENSAPLT00000036492
98724692 - 98728425
3734
ENSAPLT00000028516
98724692 - 98729559
4868