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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98729560_98751133_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
98729560 - 98751133
Intron Length:
21574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCACAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTTTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
68.1
0.41
1.1
68.7
36.3
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
57.5
0.32
1.7
74.5
36.9

Associated Gene:

Gene:
GJB7
Ensembl Gene ID:
ENSAPLG00000001764
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001758
98724860 - 98751259
26400