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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98735537_98738813_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
98735537 - 98738813
Intron Length:
3277

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCTTATTCG
5'SS Class:
major
3'SS Sequence:
CTGAAGGCAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TGAATCTGAAGG
Flanking Amino Acid:
NPELFIKPVRASYNTKHQTV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.3
51.9
46.4
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
46
-0.2
1.1
37.7
38.6
Minor 5ss
32
-2.1
3.7
42
44.7
Minor BPS
46.6
-0.4
1.8
50.54
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030992
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022485
98731323 - 98738926
7604