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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98742071_98743641_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98742071 - 98743641
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
CACTTTACTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTTACT
Flanking Amino Acid:
LKQKLGKEIREAVRKAKAEM
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
70.8
39.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.8
0.31
1.1
61
39
Minor 5ss
41.8
-0.9
2.8
50.9
45.2
Minor BPS
66
0.59
1.8
87.37
37.4

Associated Gene:

Gene:
C6orf163
Ensembl Gene ID:
ENSAPLG00000028957
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021643
98738262 - 98745586
7325