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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98765484_98765811_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
98765484 - 98765811
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAGAA
U12 Branch Point Sequence:
TTAGAAAGAATT
Flanking Amino Acid:
TKRDVQNLIQLCVTRLLDTT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
61.2
0.28
1
58.8
38.1
Major PPT
78.5
0.64
0.7
77.2
24.7
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
40.8
-0.6
2
61.36
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173