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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_98765903_98766991_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
98765903 - 98766991
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTCTTTCTAACT
Flanking Amino Acid:
VYFDMDYANRAELLREQRRV
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.6
0.69
0.7
80.1
25.3
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
59.5
0.37
1.7
75.41
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009592
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009981
98762547 - 98776719
14173